CDS

Accession Number TCMCG007C19358
gbkey CDS
Protein Id XP_009133350.2
Location complement(join(9915711..9916211,9916336..9916779,9916876..9917061,9917260..9917430,9918208..9918426,9918544..9918795,9919050..9919151,9919370..9919567,9919660..9919953,9920145..9920208,9920376..9920549,9921070..9921197,9921335..9921439,9921524..9921862,9922160..9922362,9922505..9922595,9922682..9922723))
Gene LOC103857854
GeneID 103857854
Organism Brassica rapa

Protein

Length 1170aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009135102.3
Definition regulator of nonsense transcripts UPF2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category A
Description Up-frameshift suppressor 2
KEGG_TC -
KEGG_Module M00430        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14327        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
ko03015        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0000184        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005844        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009611        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009648        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009753        [VIEW IN EMBL-EBI]
GO:0009755        [VIEW IN EMBL-EBI]
GO:0009863        [VIEW IN EMBL-EBI]
GO:0009867        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032870        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035145        [VIEW IN EMBL-EBI]
GO:0035690        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0042162        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0042742        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048571        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071229        [VIEW IN EMBL-EBI]
GO:0071236        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071395        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071446        [VIEW IN EMBL-EBI]
GO:0071495        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATCATCATCAAGAGGACAGCGAGAAACAAGACGACGAGAAGGAAGCTCTTGCTCGTCTTGAGGAGATTAAGAAGTCAATCGAAGCTAAGATGGCTCTTCGTCAAAGCAATCTCAATCCTGAACGACCTGATTCGGCGTATCTTAGGACTCTGGATTCTAGTATCAAGCGCAATACAGCAGTTATCAAGAAGTTGAAGCAGATCAACGAGGAGCAGCGTGAAGGGCTCATGGATGATCTGCGAAGTGTAAACCTTAGCAAGTTCGTTAGTGAAGCAGTTACTGCCATTTGTGAGGCCAAGCTCAAAAGCTCAGATATTCAAGCAGCTGTCCAGATATGCTCACTACTTCATCAGAGGTATAAAGAGTTCTCTCCTAGTCTAACACAAGGGCTCTTGAAAGTATTCCTTCCTGGAAAATCCGCCGACGACGTAGATGCAGACAGAAACTCAAAGGCCATGAAAAAGCGCAGTACCCTAAAACTTCTTCTGGAGCTCTACTATGTTGGAGTAATAGAAGATAGTAACATCTTCATCAGTATTATTAAGGACCTTACCAGTGCTGAACACATGAAAGATCGAGATACGACCCAGACAAATTTGACACTTCTTGCCGGTTTTGCTAGGCAAGGAAGAGTTTTTCTTGGGCTTCCCATATCTGGACAAGACGAAGATTTTTTTAAGGGGCTCGGCGTCACTGCAGAACAGAAAAAGAATTTTAAGAAAGCTTTCAACACATATTATGATGCTCTGGCAGAGTTGCTTCAGTCCGAGCACAAGTCACTTCAACAAATGGAAAAAGAAAATGCAAAGCTGGTAAATGCTAAAGGGGAGCTTAGTGAAGACAGTGCATCGTCATATGAAAAGCTGAGGAAATCATATGACCATCTCTATCGAAATATCTCCTCTTTGGCTGAAGCACTTGATATGCAGCCTCCTGTTATGCCAGAGGATGGTACAACTAGGCTCACAGCAGGGGACGAAGCCTCATCGTCTGCTGCTGTAAAGGATACATCTGTCCCGGAACCTGTTTGGGACGATGAAGAGACCAAGACATTTTATGAGTGCTTGCCTGATCTGAGGGCATTTGTTCCAGCAGTCTTGTTGGGAGAAGTGGAGCCTGCAAAGACAAAAAACAAATCATCTGAGTCTAGCTCTGAAGTTGTCGAAAGTCAACAAACGGCTGAAGACACAACAGAGTTTCCTGCTGATTCTGGTAATATGGCTGATGTCTCAACTACTGAGCAGCCAAAAGAGAAGGATGACGTAGACAAGGAAAAGGCTAAGGGTGCTAAGAAGGAAAAAGGGAAAGAAAAGGATAGTGACAAGAAATTGGAAAATGAGAAAGAGAAAGGCAAGAGCCTTGACGTGGCAAACTTCGAAAGATTGTTACAGCGACTTCCTGGTTGCGTAAGCCGTGATCTTATTGACCAGTTAACGGTGGAATATTGTTATTTGAATTCCAAGACAAACAGAAAAAAACTTGTCAAAGCGTTATTTAATGTCCCTAGGACATCTCTGGAGTTGCTAGCATACTATTCGCGTATGATTGCAACACTAGCAACGTGCATGAAAGACATCCCTTCTACGATTGTGCAGATGTTGGAGGAGGAGTTCAATTATCTAGTCCATAAAAAGGACCAAATGAATATCGAATCAAAAATCCGGAACATCAGATTTATTGGAGAACTCTGCAAGTTTAAAATTGTGCCTTCTGGGCTTGTATTCAGTTGTTTGAAGGCTTGCTTAGATGATTTTACTCATCATAACATTGATGTTGCTTGCAATCTTCTGGAGACATGTGGCCGTTTCCTTTATCGGTCTCCCGAGACCACACTCAGGATGACTAATATGCTGGACATATTGATGCGCCTGAAAAATGTCAAGAACTTAGATCCTCGTCAAAGTACTCTTGTGGAAAATGCCTACTACCTTTGTAAACCACCTGAAAGATCAGCACGAATCTCTAAAGTTCGTCCACCATTGCATCAGTATATTCGAAAATTGCTATTCTCAGATCTTGACAAAGATTCCATTACGAATGTACTGAAGCAACTGCGGAAGTTGCCATGGAGTGAATGTGAGCAATACATCTTAAAGTGTTTTATGAAGGTTCACAAGGGAAAGTATGGTCAGATTCACTTAATTGCTTCCCTGACTTCTGGATTGAGCCGCCATCATGAGGAGTTTGCGGTGGCTATTGTTGATGAGGTACTGGAGGAGATAAGGGTTGGGCTTGAGTTGAATGAATATGGGGCACAACAGAAGCGTCTGGCCCATATGAGATTCTTAGGGGAGCTGTACAACTACGAGCACGTAGATTCGTCTGTGATATTCGAGACGCTTTACTTAACTCTTTCATATGGTCATGGTACTTCGGAGCAAGAGGTGCTGGATCCGCCAGAAGATTTTTTCCGTGTCAGGATGGTTATCATTCTTCTGGAAACATGTGGACACTACTTTGATCGAGGTTCTTCAAAGAAAAGGCTTGATCAGTTTTTGGTACATTTCCAGAGATACACACTGAGCAAAGGTCATCTTCCTCTGGATATTGAATTTGACTTGCAGGATCTTTTTGCCAATTTGAGACCCAATATGACCCGTTACACGACTATTGATGAGATCAATGCAGCTATACTTCAGCTGGAAGAGCGTGAACATGCTTCTGCTGCAGACAAAGTCAGTGTAGAAAGACATCCAGATACAAAGCGTCCAGGCATGTTTTCGAACGGTAAAAGTAATGAAAAAAATATTGGAGAGAATGGTGAAGCTCCCAAAGAAGAAAGCGACAGTGATTCTGGTAGTGGCTCTGCTGTCCGAGATGGACAGAATGAAGAGTTGGATGATGGAAATCATGAACGGGGATCTGATAGTGACGATGGGGATGACTATGAAGATGGCGTTGGACCTGGATCTGATGATGATAACGAATTTCGGGTAAGGCAGAAGGTAGTAACCGTAGATCCTGAGGAGCAAGCAGACTTTGATCAAGAACTCAAGGCTTTACTTCAGGAGAGCATAGAGCAAAGAAAGCTAGAATTGCGTGGTAGACCAGCATTGAACATGACAATACCAATGAGTGTTTTCGAAGGATCTGGAAAAGATCATCACCATTTTGGGCGAGTCACAGGTGACAACGGTGAAGAAGTCGTGGATGAAGAGAATGGAGAGCCAAGAGAAGTTCAAGTGAAGGTCCTAGTGAAGAGAGGAAACAAACAACAAACGAAACAAATGCTAATCCCGAGTGATTGCTCGCTAGTGCAGAGCACAAAACAGAAAGAGGCTGCGGATTTGGAAGAGAAGCAAGATATAAAGAGGTTAGTGCTCGAGTACAACGAGAGAGACGAAGAGGAAGCTAATGGGTTAGGGACACAAGCCTCGAATTGGATACCTGGTGGAAGCAGAGGAAACACTCGTAGCACAGGTGAAGGAAGTGGGAAAGGTGGTGGATCTCGTCACCGGTTTGTTTATCATCAAGGAGGTGGCGGTTCGTATTATTCCCGAAGAAAGTAA
Protein:  
MDHHQEDSEKQDDEKEALARLEEIKKSIEAKMALRQSNLNPERPDSAYLRTLDSSIKRNTAVIKKLKQINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSPSLTQGLLKVFLPGKSADDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNIFISIIKDLTSAEHMKDRDTTQTNLTLLAGFARQGRVFLGLPISGQDEDFFKGLGVTAEQKKNFKKAFNTYYDALAELLQSEHKSLQQMEKENAKLVNAKGELSEDSASSYEKLRKSYDHLYRNISSLAEALDMQPPVMPEDGTTRLTAGDEASSSAAVKDTSVPEPVWDDEETKTFYECLPDLRAFVPAVLLGEVEPAKTKNKSSESSSEVVESQQTAEDTTEFPADSGNMADVSTTEQPKEKDDVDKEKAKGAKKEKGKEKDSDKKLENEKEKGKSLDVANFERLLQRLPGCVSRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMIATLATCMKDIPSTIVQMLEEEFNYLVHKKDQMNIESKIRNIRFIGELCKFKIVPSGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLCKPPERSARISKVRPPLHQYIRKLLFSDLDKDSITNVLKQLRKLPWSECEQYILKCFMKVHKGKYGQIHLIASLTSGLSRHHEEFAVAIVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYEHVDSSVIFETLYLTLSYGHGTSEQEVLDPPEDFFRVRMVIILLETCGHYFDRGSSKKRLDQFLVHFQRYTLSKGHLPLDIEFDLQDLFANLRPNMTRYTTIDEINAAILQLEEREHASAADKVSVERHPDTKRPGMFSNGKSNEKNIGENGEAPKEESDSDSGSGSAVRDGQNEELDDGNHERGSDSDDGDDYEDGVGPGSDDDNEFRVRQKVVTVDPEEQADFDQELKALLQESIEQRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVTGDNGEEVVDEENGEPREVQVKVLVKRGNKQQTKQMLIPSDCSLVQSTKQKEAADLEEKQDIKRLVLEYNERDEEEANGLGTQASNWIPGGSRGNTRSTGEGSGKGGGSRHRFVYHQGGGGSYYSRRK